The department of Biochemistry has acquired a well established computer networking laboratory through the support from UGC and DST, New Delhi and actively engaged in research and teaching in the field of BIOINFORMTICS. The present nominated coordinator has organized three national workshops in the field of Bioinformatics and has collaboration with other Bioinformatics Centers in exchange of Bioinformatics resources. The following infrastructure available at the department is actively supporting the teaching and research activities at the S.K. University in the field of Bioinformatics.
a. Computer Hardware :
Hi-end Server : 1 Unit
PC-Pentium IV : 10 Units
Scanner (HP Scanjet) : 1 Units
Laser Printer (HP LaserJet 6L Pro) : 1 Unit
Inject Printer (HP DeskJet 640C) : 1 Unit
Dot Matrix Printer (EPSON DL2400) : 1 Unit
DVD and CD-Writer : 1 Unit
b. Communication Facilities :
c. Library Resources In Bioinformatics
Text Books : > 150
Journals : VATIS update, PC-quest, Genetic Engineering and Biotechnology Monitor, Drug Design ToDay (online), free Internet journals, Everyman’s Science. Current Trends in Biotechnology and Pharmacy.
d. Databases acquired currently :
Online Access to E-journals : Plant Physiology, Plant Cell, Plant & Cell Physiology (free academic).
Name of Database |
Broad Subject area |
Broad functional area |
Developed or acquired |
Agris |
Agricultural Science |
Bibliographical database |
Acquired |
PDB |
Structural DB |
Experimental Structures |
Acquired |
Rice Germplasm |
Varietal information, Breeding |
Research/ Teaching |
Acquired |
e. Interactive Multimedia CD’s developed (Educational aids)
Title |
Topics |
Year |
BIOINFORMATICS MADE EASY |
Proteomics, Genomics, Functional Genomics, Human Genome Project, Sequence analysis, Prediction of Protein Structure, PCR , primer design, ORF finding, Drug Design by docking, Drug discovery in Bioinformatics Age, Protein Motif Finding etc. |
2007 |
HUMAN GENOME PROJECT |
Genome project, genomic libraries, genome sequencing, assembly, ELSI |
2006 |
IMMUNOLOGY MADE EASY |
Immune system, cells of immune system, chemotaxis, compliment, shift, drift, phagocytosis, MHC-I, MHC-II, |
2006 |
BIOLOGY MADE EASY |
Human Body : Digestion, Nervous, Muscular, Endocrine, Nervous system, Circulatory system, Skeletal system, Reproductive system etc., |
2006 |
Taste of BIOCHEMISTRY |
Protein sequencing, Nucleic acid sequencing, SDS-PAGE, Polymerase chain reaction PCR, Site directed mutagenesis, Metabolic pathways, Enzyme regulation, Structure and Organization of Chromosomes and DNA etc., |
2005 |
f. Bioinformatics Software available for students, faculty and visitors:
The department procured the following softwares basically having application in biological sciences and are in use both for research and teaching purpose. These softwares are WINDOWS/LINUX compatible.
Name of Software |
Function |
Source |
System Requirement |
GENDOC |
Gene annotations |
Acquired |
Windows PC |
EMBOSS |
Sequence analysis package |
Acquired |
Linux |
ClustalW |
Multiple Sequence alignment |
Acquired |
Windows PC |
SPSS 7.5 |
Statistical data analysis |
Acquired |
Windows PC |
Phylip |
Phylogenic data analysis |
Acquired |
Windows PC |
DNASIS |
DNA analysis |
Acquired |
Windows PC |
pDRAW |
Plasmid drawing |
Acquired |
Windows PC |
Vector NTI |
Gene cloning, PCR primer |
Acquired |
Windows PC |
Bioedit 4.7. |
DNA and Protein analysis |
Acquired |
Windows PC |
Rapidistance |
RAPD data analysis |
Acquired |
Windows PC |
DNAclub |
DNA analysis |
Acquired |
Windows PC |
PURUFY |
Education Software on Protein Purification |
Acquired |
Windows PC |
GENCODE |
Education Software on Genetic Code |
Acquired |
Windows PC |
PHTO |
Education Software on Photosynthesis |
Acquired |
Windows PC |
DNA-Star |
DNA analysis |
Acquired |
Windows PC |
Modeller |
Homology Modeling |
Acquired |
Windows PC |
SPDB v |
Visualization package |
Acquired |
Windows PC |
HYPERCHEM |
Chemical dynamics |
Acquired |
Windows PC |
GROMOS |
Molecular Dynamics |
Acquired |
Linux |