Infrastructure
Department of Biochemistry
Sri Krishnadevaraya University
SV Puram,Anantapur
Andhra Pradesh-India 515 003


Infrastructure

The department of Biochemistry has acquired a well established computer networking laboratory through the support from UGC and DST, New Delhi and actively engaged in research and teaching in the field of BIOINFORMTICS.  The present nominated coordinator has organized three national workshops in the field of Bioinformatics and has collaboration with other Bioinformatics Centers in exchange of Bioinformatics resources.  The following infrastructure available at the department is actively supporting the teaching and research activities at the S.K. University in the field of Bioinformatics.
 
a.   Computer Hardware :
Hi-end Server                                              :          1   Unit
PC-Pentium IV                                             :          10 Units
Scanner (HP Scanjet)                                   :          1   Units
Laser Printer (HP LaserJet 6L Pro)                 :           1   Unit
Inject Printer (HP DeskJet 640C)                  :           1   Unit
Dot Matrix Printer (EPSON DL2400)               :           1   Unit
DVD and CD-Writer                                     :           1   Unit

   b. Communication Facilities :

  1. VSAT from NICNET (University facility)
  2. Campus LAN with fiber optical net working between all departments and  administrative                blocks (LAN)

      c.  Library Resources In Bioinformatics

           Text Books        :           > 150

Journals :      VATIS update, PC-quest, Genetic Engineering and Biotechnology                              Monitor, Drug Design ToDay (online), free Internet journals, Everyman’s                          Science. Current Trends in Biotechnology and Pharmacy.
          Online Access to E-journals :  Plant Physiology, Plant Cell, Plant & Cell                                                                       Physiology (free academic).

d. Databases acquired currently :

Name of Database

Broad Subject area

Broad functional area

Developed or acquired

Agris

Agricultural Science

Bibliographical database

Acquired

PDB

Structural DB

Experimental Structures

Acquired

Rice Germplasm

Varietal information, Breeding

Research/ Teaching

Acquired

e. Interactive Multimedia CD’s developed (Educational aids)
  

Title

Topics

Year

 

BIOINFORMATICS MADE EASY

Proteomics, Genomics, Functional Genomics, Human Genome Project, Sequence analysis, Prediction of Protein Structure, PCR , primer design, ORF finding, Drug Design by docking, Drug discovery in Bioinformatics Age, Protein Motif Finding etc.

 

2007

HUMAN GENOME PROJECT

Genome project, genomic libraries, genome sequencing, assembly, ELSI

2006

IMMUNOLOGY MADE EASY

Immune system, cells of immune system, chemotaxis, compliment, shift, drift, phagocytosis, MHC-I, MHC-II,

 

2006

BIOLOGY MADE EASY 
HUMAN BODY

Human Body : Digestion, Nervous, Muscular, Endocrine, Nervous system, Circulatory system, Skeletal system, Reproductive system  etc.,

 

2006

Taste of BIOCHEMISTRY

Protein sequencing, Nucleic acid sequencing, SDS-PAGE, Polymerase chain reaction PCR, Site directed mutagenesis, Metabolic pathways, Enzyme regulation, Structure  and Organization of Chromosomes and DNA etc.,

 

2005

f.  Bioinformatics Software available for students, faculty and visitors:

The department procured the following softwares basically having application in biological sciences and are in use both for research and teaching purpose. These softwares are WINDOWS/LINUX compatible.
                                                 


Name of Software

 

Function

 

Source

System Requirement

GENDOC

Gene annotations

Acquired

Windows PC

EMBOSS

Sequence analysis package

Acquired

Linux

ClustalW

Multiple Sequence alignment

Acquired

Windows PC

SPSS 7.5

Statistical data analysis

Acquired

Windows PC

Phylip

Phylogenic data analysis

Acquired

Windows PC

DNASIS

DNA analysis

Acquired

Windows PC

pDRAW

Plasmid drawing

Acquired

Windows PC

Vector NTI

Gene cloning, PCR primer

Acquired

Windows PC

Bioedit 4.7.

DNA and Protein analysis

Acquired

Windows PC

Rapidistance

RAPD data analysis

Acquired

Windows PC

DNAclub

DNA analysis

Acquired

Windows PC

PURUFY

Education Software on Protein Purification

Acquired

Windows PC

GENCODE

Education Software on Genetic Code

Acquired

Windows PC

PHTO

Education Software on Photosynthesis

Acquired

Windows PC

DNA-Star

DNA analysis

Acquired

Windows PC

Modeller

Homology Modeling

Acquired

Windows PC

SPDB v

Visualization package

Acquired

Windows PC

HYPERCHEM

Chemical dynamics

Acquired

Windows PC

GROMOS

Molecular Dynamics

Acquired

Linux